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LINC00477 long intergenic non-protein coding RNA 477 [ Homo sapiens (human) ]

Gene ID: 144360, updated on 22-Sep-2022

Summary

Official Symbol
LINC00477provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 477provided by HGNC
Primary source
HGNC:HGNC:26557
See related
Ensembl:ENSG00000197503 AllianceGenome:HGNC:26557
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM191B; C12orf67
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

See LINC00477 in Genome Data Viewer
Location:
12p12.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (24566964..24584168, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (24437776..24454976, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (24719898..24737102, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 5 Neighboring gene Sharpr-MPRA regulatory region 6359 Neighboring gene SOX5 antisense RNA 1 Neighboring gene microRNA 920 Neighboring gene uncharacterized LOC105369698 Neighboring gene lysine rich nucleolar protein 1 pseudogene 1 Neighboring gene ribosomal protein L21 pseudogene 102 Neighboring gene uncharacterized LOC124902897 Neighboring gene RNA, 7SL, cytoplasmic 38, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association of lipid-lowering response to statins in combined study populations.
EBI GWAS Catalog
Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • family with sequence similarity 191, member B

Clone Names

  • FLJ32894, MGC129798, MGC129799

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029451.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087312, AK057456
    Related
    ENST00000483544.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    24566964..24584168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    24437776..24454976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_144667.1: Suppressed sequence

    Description
    NM_144667.1: This RefSeq was permanently suppressed because the locus is not thought to be protein-coding.