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RBBP8NL RBBP8 N-terminal like [ Homo sapiens (human) ]

Gene ID: 140893, updated on 10-Oct-2023

Summary

Official Symbol
RBBP8NLprovided by HGNC
Official Full Name
RBBP8 N-terminal likeprovided by HGNC
Primary source
HGNC:HGNC:16144
See related
Ensembl:ENSG00000130701 AllianceGenome:HGNC:16144
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf151
Summary
Located in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in small intestine (RPKM 2.1), duodenum (RPKM 2.0) and 16 other tissues See more
Orthologs
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Genomic context

See RBBP8NL in Genome Data Viewer
Location:
20q13.33
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62410237..62427539, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64206781..64224245, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (60985293..61002595, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:60961625-60962316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60962317-60963008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60967444-60967944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60967945-60968445 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60968662-60969186 Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21 Neighboring gene uncharacterized LOC105372709 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13112 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60998065-60998856 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61001435-61002194 Neighboring gene uncharacterized LOC105372710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61012716-61013216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61016724-61017224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61017225-61017725 Neighboring gene Sharpr-MPRA regulatory region 3586 Neighboring gene GATA binding protein 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61048659-61049319

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
RBBP8 N-terminal-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080833.3NP_543023.2  RBBP8 N-terminal-like protein

    See identical proteins and their annotated locations for NP_543023.2

    Status: VALIDATED

    Source sequence(s)
    AK074919, AL121832, BC033142, DA871775
    Consensus CDS
    CCDS13498.1
    UniProtKB/Swiss-Prot
    B2RP98, Q8N4Z9, Q8NC74, Q9BR75, Q9H0Y9
    UniProtKB/TrEMBL
    A8K2N4
    Related
    ENSP00000252998.1, ENST00000252998.2
    Conserved Domains (1) summary
    pfam10482
    Location:4122
    CtIP_N; Tumour-suppressor protein CtIP N-terminal domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62410237..62427539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64206781..64224245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)