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ZSWIM3 zinc finger SWIM-type containing 3 [ Homo sapiens (human) ]

Gene ID: 140831, updated on 23-Nov-2021

Summary

Official Symbol
ZSWIM3provided by HGNC
Official Full Name
zinc finger SWIM-type containing 3provided by HGNC
Primary source
HGNC:HGNC:16157
See related
Ensembl:ENSG00000132801
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PPP1R174; C20orf164
Expression
Ubiquitous expression in testis (RPKM 2.2), lymph node (RPKM 1.8) and 25 other tissues See more
Orthologs
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Genomic context

See ZSWIM3 in Genome Data Viewer
Location:
20q13.12
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (45857614..45879122)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (44486253..44507761)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene troponin C2, fast skeletal type Neighboring gene sorting nexin family member 21 Neighboring gene acyl-CoA thioesterase 8 Neighboring gene zinc finger SWIM-type containing 1 Neighboring gene spermatogenesis associated 25 Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger SWIM domain-containing protein 3
Names
protein phosphatase 1, regulatory subunit 174
zinc finger, SWIM domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080752.4NP_542790.2  zinc finger SWIM domain-containing protein 3

    See identical proteins and their annotated locations for NP_542790.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the protein-coding transcript.
    Source sequence(s)
    BC027611, DA520427
    Consensus CDS
    CCDS13381.1
    UniProtKB/Swiss-Prot
    Q96MP5
    Related
    ENSP00000255152.2, ENST00000255152.3
    Conserved Domains (1) summary
    pfam04434
    Location:531570
    SWIM; SWIM zinc finger

RNA

  1. NR_037628.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon compared to variant 1. The alternate exon contains the predicted translation intiation site, but it is overlapped by an upstream ORF with a strong Kozak consensus signal. Therefore, this transcript is likely to be non-protein-coding.
    Source sequence(s)
    BC027611, DA520427, DC363945

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    45857614..45879122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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