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NOL4L nucleolar protein 4 like [ Homo sapiens (human) ]

Gene ID: 140688, updated on 6-Sep-2021

Summary

Official Symbol
NOL4Lprovided by HGNC
Official Full Name
nucleolar protein 4 likeprovided by HGNC
Primary source
HGNC:HGNC:16106
See related
Ensembl:ENSG00000197183 MIM:618893
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf112; C20orf113
Expression
Broad expression in testis (RPKM 8.2), small intestine (RPKM 6.1) and 25 other tissues See more
Orthologs
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Genomic context

See NOL4L in Genome Data Viewer
Location:
20q11.21
Exon count:
21
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (32443059..32585333, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (31030862..31173135, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene kinesin family member 3B Neighboring gene ASXL transcriptional regulator 1 Neighboring gene uncharacterized LOC101929698 Neighboring gene VISTA enhancer hs2225 Neighboring gene uncharacterized LOC105372592 Neighboring gene Sharpr-MPRA regulatory region 4335 Neighboring gene NOL4L divergent transcript Neighboring gene chromosome 20 open reading frame 203

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • dJ1184F4.2, dJ1184F4.4, DKFZp566G1424

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256798.2NP_001243727.1  nucleolar protein 4-like isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript, and encodes the longer isoform (1).
    Source sequence(s)
    AK056286, AL122043, AL133343, AL834520, BC023657, BC065370, BQ067609, BX281715
    Consensus CDS
    CCDS74718.1
    UniProtKB/Swiss-Prot
    Q96MY1
    UniProtKB/TrEMBL
    A0A087X0N3, Q6P0R2
    Related
    ENSP00000483523.1, ENST00000621426.6
    Conserved Domains (1) summary
    pfam17921
    Location:131185
    Integrase_H2C2; Integrase zinc binding domain
  2. NM_001351680.2NP_001338609.1  nucleolar protein 4-like isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL034550
  3. NM_080616.6NP_542183.2  nucleolar protein 4-like isoform 2

    See identical proteins and their annotated locations for NP_542183.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' terminal exon compared to variant 1. This results in translation initiation from an in-frame, downstream AUG, and an isofom (2) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AK056286, AL122043, AL834520, BC038088, BC065370, BX281715
    Consensus CDS
    CCDS13202.1
    UniProtKB/Swiss-Prot
    Q96MY1
    Related
    ENSP00000352704.5, ENST00000359676.9

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    32443059..32585333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005260284.4XP_005260341.1  nucleolar protein 4-like isoform X4

    See identical proteins and their annotated locations for XP_005260341.1

    Conserved Domains (1) summary
    pfam17921
    Location:1550
    Integrase_H2C2; Integrase zinc binding domain
  2. XM_017027669.1XP_016883158.1  nucleolar protein 4-like isoform X5

    UniProtKB/Swiss-Prot
    Q96MY1
  3. XM_006723703.3XP_006723766.1  nucleolar protein 4-like isoform X4

    See identical proteins and their annotated locations for XP_006723766.1

    Conserved Domains (1) summary
    pfam17921
    Location:1550
    Integrase_H2C2; Integrase zinc binding domain
  4. XM_005260286.4XP_005260343.1  nucleolar protein 4-like isoform X4

    See identical proteins and their annotated locations for XP_005260343.1

    Conserved Domains (1) summary
    pfam17921
    Location:1550
    Integrase_H2C2; Integrase zinc binding domain
  5. XM_005260283.4XP_005260340.1  nucleolar protein 4-like isoform X4

    See identical proteins and their annotated locations for XP_005260340.1

    Conserved Domains (1) summary
    pfam17921
    Location:1550
    Integrase_H2C2; Integrase zinc binding domain
  6. XM_005260285.4XP_005260342.2  nucleolar protein 4-like isoform X3

  7. XM_006723702.3XP_006723765.1  nucleolar protein 4-like isoform X4

    See identical proteins and their annotated locations for XP_006723765.1

    Conserved Domains (1) summary
    pfam17921
    Location:1550
    Integrase_H2C2; Integrase zinc binding domain
  8. XM_024451833.1XP_024307601.1  nucleolar protein 4-like isoform X5

  9. XM_005260289.4XP_005260346.1  nucleolar protein 4-like isoform X5

    See identical proteins and their annotated locations for XP_005260346.1

    UniProtKB/Swiss-Prot
    Q96MY1
    Related
    ENSP00000478146.1, ENST00000616976.1
  10. XM_005260288.2XP_005260345.1  nucleolar protein 4-like isoform X5

    See identical proteins and their annotated locations for XP_005260345.1

    UniProtKB/Swiss-Prot
    Q96MY1
  11. XM_011528562.2XP_011526864.1  nucleolar protein 4-like isoform X1

  12. XM_011528563.1XP_011526865.1  nucleolar protein 4-like isoform X2

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