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LLCFC1 LLLL and CFNLAS motif containing 1 [ Homo sapiens (human) ]

Gene ID: 135927, updated on 23-Nov-2021

Summary

Official Symbol
LLCFC1provided by HGNC
Official Full Name
LLLL and CFNLAS motif containing 1provided by HGNC
Primary source
HGNC:HGNC:21750
See related
Ensembl:ENSG00000165131 MIM:618946
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SOF1; ctm-1; C7orf34
Expression
Restricted expression toward testis (RPKM 14.8) See more
Orthologs
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Genomic context

See LLCFC1 in Genome Data Viewer
Location:
7q34
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (142939484..142940868)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (142636581..142637955)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375542 Neighboring gene uncharacterized LOC105375543 Neighboring gene Kell metallo-endopeptidase (Kell blood group) Neighboring gene CRISPRi-validated cis-regulatory element chr7.5193

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
sperm-egg fusion protein LLCFC1
Names
LLLL and CFNLAS motif-containing protein 1
MSSP-binding protein CTM-1
sperm-oocyte fusion required protein 1
uncharacterized protein C7orf34

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382496.1NP_001369425.1  sperm-egg fusion protein LLCFC1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC245136
    Consensus CDS
    CCDS5876.2
    Related
    ENSP00000386450.4, ENST00000409607.5
    Conserved Domains (1) summary
    pfam15838
    Location:31102
    DUF4717; Domain of unknown function (DUF4717)

RNA

  1. NR_160290.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245136

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    142939484..142940868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187562.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    962551..963935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178829.5: Suppressed sequence

    Description
    NM_178829.5: This RefSeq was removed because currently there is insufficient support for the start codon, and a downstream start codon is better supported.
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