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C6orf141 chromosome 6 open reading frame 141 [ Homo sapiens (human) ]

Gene ID: 135398, updated on 18-Aug-2020

Summary

Official Symbol
C6orf141provided by HGNC
Official Full Name
chromosome 6 open reading frame 141provided by HGNC
Primary source
HGNC:HGNC:21351
See related
Ensembl:ENSG00000197261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in gall bladder (RPKM 5.1), duodenum (RPKM 3.8) and 17 other tissues See more
Orthologs

Genomic context

See C6orf141 in Genome Data Viewer
Location:
6p12.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (49550644..49561916)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (49518113..49523166)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene centromere protein Q Neighboring gene glycine-N-acyltransferase like 3 Neighboring gene cytochrome P450 family 2 subfamily AC member 1, pseudogene Neighboring gene Rh associated glycoprotein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC46457

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
blastocyst hatching IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C6orf141

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145652.2NP_001139124.2  uncharacterized protein C6orf141

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the protein-coding transcript.
    Source sequence(s)
    AL590244
    Consensus CDS
    CCDS55018.1
    Related
    ENSP00000434602.2, ENST00000529246.3

RNA

  1. NR_146853.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  2. NR_146854.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  3. NR_146855.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  4. NR_146856.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  5. NR_146857.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  6. NR_146858.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  7. NR_146859.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  8. NR_146860.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  9. NR_146861.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  10. NR_146862.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  11. NR_146863.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244
  12. NR_146864.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590244

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    49550644..49561916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005248850.3XP_005248907.1  uncharacterized protein C6orf141 isoform X1

    See identical proteins and their annotated locations for XP_005248907.1

    UniProtKB/Swiss-Prot
    Q5SZD1
  2. XM_017010298.1XP_016865787.1  uncharacterized protein C6orf141 isoform X1

    UniProtKB/Swiss-Prot
    Q5SZD1
  3. XM_017010296.1XP_016865785.1  uncharacterized protein C6orf141 isoform X1

    UniProtKB/Swiss-Prot
    Q5SZD1
    Related
    ENSP00000431184.1, ENST00000371194.7
  4. XM_005248852.2XP_005248909.1  uncharacterized protein C6orf141 isoform X1

    See identical proteins and their annotated locations for XP_005248909.1

    UniProtKB/Swiss-Prot
    Q5SZD1
  5. XM_005248853.2XP_005248910.1  uncharacterized protein C6orf141 isoform X1

    See identical proteins and their annotated locations for XP_005248910.1

    UniProtKB/Swiss-Prot
    Q5SZD1
    Related
    ENSP00000436754.1, ENST00000414696.5
  6. XM_006714997.2XP_006715060.1  uncharacterized protein C6orf141 isoform X1

    See identical proteins and their annotated locations for XP_006715060.1

    UniProtKB/Swiss-Prot
    Q5SZD1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153344.1: Suppressed sequence

    Description
    NM_153344.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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