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MgABN1 putative Arabinan endo-1,5-alpha-L-arabinosidase [ Zymoseptoria tritici IPO323 ]

Gene ID: 13402665, updated on 14-Dec-2023

Summary

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Gene symbol
MgABN1
Gene description
putative Arabinan endo-1,5-alpha-L-arabinosidase
Locus tag
MYCGRDRAFT_105323
Gene type
protein coding
RNA name
putative Arabinan endo-1,5-alpha-L-arabinosidase
RefSeq status
PROVISIONAL
Organism
Zymoseptoria tritici IPO323 (strain: IPO323, type-material: culture from epitype of Zymoseptoria tritici)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Capnodiales; Mycosphaerellaceae; Zymoseptoria
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Genomic context

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Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_018211.1 (140967..142117)

Chromosome 8 - NC_018211.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018211.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis. Goodwin SB, et al. PLoS Genet, 2011 Jun. PMID 21695235, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arabinan endo-1,5-alpha-L-arabinosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative Arabinan endo-1,5-alpha-L-arabinosidase
XP_003849872.1
  • Arabinan Endo-1,5-Alpha-L-Arabinosidase (Family 43 contains both B-xylosidase and Arabinan Endo-1,5-Alpha-L-Arabinosidase;in NCBI blast, it's more related to the latter; does contain partial XynB Conserved Domain-judgement call) (SignaL P secreted)

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018211.1 Reference assembly

    Range
    140967..142117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003849824.1 → XP_003849872.1  putative Arabinan endo-1,5-alpha-L-arabinosidase [Zymoseptoria tritici IPO323]

    See identical proteins and their annotated locations for XP_003849872.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1Y6LQI0, F9XHT6
    Conserved Domains (1) summary
    cd08998
    Location:38 → 318
    GH43_ABN_1; Glycosyl hydrolase family 43
Protein Accession Links
GenPept Link UniProtKB Link
EGP84848.1

Gene LinkOut

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Molecular Biology Databases