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LDBPK_090490 hypothetical tetratricopeptide repeat protein [ Leishmania donovani ]

Gene ID: 13392042, updated on 14-Dec-2023

Summary

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Gene symbol
LDBPK_090490
Gene description
hypothetical tetratricopeptide repeat protein
Locus tag
LDBPK_090490
Gene type
protein coding
RNA name
hypothetical tetratricopeptide repeat protein
RefSeq status
PROVISIONAL
Organism
Leishmania donovani (strain: BPK282A1)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leishmania
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Genomic context

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Location:
chromosome: 9
Exon count:
1
Sequence:
Chromosome: 9; NC_018236.1 (185655..187562)

Chromosome 9 - NC_018236.1Genomic Context describing neighboring genes Neighboring gene tyrosine phosphatase, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018236.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Downing T, et al. Genome Res, 2011 Dec. PMID 22038251, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BBSome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical tetratricopeptide repeat protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018236.1 Reference assembly

    Range
    185655..187562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003858681.1 → XP_003858729.1  hypothetical tetratricopeptide repeat protein [Leishmania donovani]

    See identical proteins and their annotated locations for XP_003858729.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A504X1P1, A0A504X6Z4, E9B9T6
    Conserved Domains (3) summary
    TIGR02521
    Location:381 → 588
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    COG0457
    Location:292 → 466
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:382 → 405
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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