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C5orf58 chromosome 5 open reading frame 58 [ Homo sapiens (human) ]

Gene ID: 133874, updated on 15-Jun-2019

Summary

Official Symbol
C5orf58provided by HGNC
Official Full Name
chromosome 5 open reading frame 58provided by HGNC
Primary source
HGNC:HGNC:37272
See related
Ensembl:ENSG00000234511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 12.9), bone marrow (RPKM 2.8) and 5 other tissues See more
Orthologs

Genomic context

See C5orf58 in Genome Data Viewer
Location:
5q35.1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 5 NC_000005.10 (170231730..170252569)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (169659916..169673235)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene keratin 18 pseudogene 41 Neighboring gene long intergenic non-protein coding RNA 1187 Neighboring gene lymphocyte cytosolic protein 2 Neighboring gene uncharacterized LOC100128059 Neighboring gene long intergenic non-protein coding RNA 1366

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
NHGRI GWA Catalog

General protein information

Preferred Names
putative uncharacterized protein C5orf58

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102609.3NP_001096079.2  putative uncharacterized protein C5orf58

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199
  2. NM_001305393.2NP_001292322.2  putative uncharacterized protein C5orf58

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199
  3. NM_001305394.2NP_001292323.2  putative uncharacterized protein C5orf58

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199

RNA

  1. NR_131091.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199
    Related
    ENST00000524171.5
  2. NR_131092.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199
  3. NR_161261.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199
  4. NR_161262.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199
  5. NR_161263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008660, AC034199

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    170232446..170252570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011534432.2XP_011532734.1  putative uncharacterized protein C5orf58 isoform X1

  2. XM_017009032.1XP_016864521.1  putative uncharacterized protein C5orf58 isoform X4

    UniProtKB/Swiss-Prot
    C9J3I9
  3. XM_017009033.1XP_016864522.1  putative uncharacterized protein C5orf58 isoform X4

    UniProtKB/Swiss-Prot
    C9J3I9
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