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RTP1 receptor transporter protein 1 [ Homo sapiens (human) ]

Gene ID: 132112, updated on 13-May-2022

Summary

Official Symbol
RTP1provided by HGNC
Official Full Name
receptor transporter protein 1provided by HGNC
Primary source
HGNC:HGNC:28580
See related
Ensembl:ENSG00000175077 MIM:609137; AllianceGenome:HGNC:28580
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Z3CXXC1
Summary
Enables olfactory receptor binding activity. Involved in protein insertion into membrane. Located in cell surface. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See RTP1 in Genome Data Viewer
Location:
3q27.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (187197486..187201462)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (190014908..190018884)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (186915274..186919250)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 1 Neighboring gene ST6GAL1 promoter P1 Neighboring gene ribosomal protein L39 pseudogene 19 Neighboring gene ribosomal protein L39 like Neighboring gene uncharacterized LOC101929106 Neighboring gene uncharacterized LOC105374260 Neighboring gene MBL associated serine protease 1 Neighboring gene MASP1 intron CAGE-defined mid-level expression enhancer

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC35450

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables olfactory receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables olfactory receptor binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
involved_in detection of chemical stimulus involved in sensory perception of bitter taste IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein insertion into membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein insertion into membrane IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
receptor-transporting protein 1
Names
3CxxC-type zinc finger protein 1
receptor (chemosensory) transporter protein 1
zinc finger, 3CxxC-type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153708.3NP_714919.2  receptor-transporting protein 1

    See identical proteins and their annotated locations for NP_714919.2

    Status: VALIDATED

    Source sequence(s)
    BC034744, BC065202
    Consensus CDS
    CCDS3287.2
    UniProtKB/Swiss-Prot
    P59025
    Related
    ENSP00000311712.4, ENST00000312295.5
    Conserved Domains (1) summary
    pfam13695
    Location:87197
    zf-3CxxC; Zinc-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    187197486..187201462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791769.1 Reference GRCh38.p14 PATCHES

    Range
    7165..11141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    190014908..190018884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)