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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011654.1 RefSeqGene
- Range
-
5000..91958
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001377289.1 → NP_001364218.1 collagen alpha-1(IX) chain isoform 3 precursor
Status: REVIEWED
- Source sequence(s)
-
AL080275, AL160262
- Consensus CDS
-
CCDS93940.1
- UniProtKB/TrEMBL
-
A0A804HIB6
- Related
- ENSP00000506990.1, ENST00000683980.2
- Conserved Domains (1) summary
-
- pfam01391
Location:253 → 309
- Collagen; Collagen triple helix repeat (20 copies)
-
NM_001377290.1 → NP_001364219.1 collagen alpha-1(IX) chain isoform 4 precursor
Status: REVIEWED
- Source sequence(s)
-
AL080275, AL160262
- Related
- ENSP00000508147.1, ENST00000683758.1
- Conserved Domains (1) summary
-
- pfam01391
Location:244 → 298
- Collagen; Collagen triple helix repeat (20 copies)
-
NM_001377291.1 → NP_001364220.1 collagen alpha-1(IX) chain isoform 5 precursor
Status: REVIEWED
- Source sequence(s)
-
AL080275
- Consensus CDS
-
CCDS93941.1
- Related
- ENSP00000359527.3, ENST00000370496.3
- Conserved Domains (1) summary
-
- smart00210
Location:50 → 244
- TSPN; Thrombospondin N-terminal -like domains
-
NM_001851.6 → NP_001842.3 collagen alpha-1(IX) chain isoform 1 precursor
See identical proteins and their annotated locations for NP_001842.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1, also known as the long form).
- Source sequence(s)
-
AL080275, AL160262
- Consensus CDS
-
CCDS4971.1
- UniProtKB/Swiss-Prot
- P20849, Q9Y6P3
- Related
- ENSP00000349790.6, ENST00000357250.11
- Conserved Domains (2) summary
-
- pfam01391
Location:493 → 552
- Collagen; Collagen triple helix repeat (20 copies)
- smart00210
Location:50 → 244
- TSPN; Thrombospondin N-terminal -like domains
-
NM_078485.4 → NP_511040.2 collagen alpha-1(IX) chain isoform 2 precursor
See identical proteins and their annotated locations for NP_511040.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and lacks several exons in the 5' coding region, compared to variant 1. These differences cause translation initiation at a unique AUG and an isoform (2, also known as the short form) with a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AL160262, AW021120, BC063646, BF196880, CA392556, X54412
- Consensus CDS
-
CCDS47447.1
- UniProtKB/Swiss-Prot
-
P20849
- Related
- ENSP00000315252.7, ENST00000320755.12
- Conserved Domains (1) summary
-
- pfam01391
Location:250 → 309
- Collagen; Collagen triple helix repeat (20 copies)
RNA
-
NR_165185.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AL080275, AL160262
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
70215061..70303084 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011535429.4 → XP_011533731.1 collagen alpha-1(IX) chain isoform X1
- Conserved Domains (2) summary
-
- pfam01391
Location:493 → 552
- Collagen; Collagen triple helix repeat (20 copies)
- smart00210
Location:50 → 244
- TSPN; Thrombospondin N-terminal -like domains
-
XM_017010246.3 → XP_016865735.1 collagen alpha-1(IX) chain isoform X2
-
XM_047418180.1 → XP_047274136.1 collagen alpha-1(IX) chain isoform X4
-
XM_047418179.1 → XP_047274135.1 collagen alpha-1(IX) chain isoform X3
-
XM_017010247.3 → XP_016865736.1 collagen alpha-1(IX) chain isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
71395620..71483638 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)