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C22orf39 chromosome 22 open reading frame 39 [ Homo sapiens (human) ]

Gene ID: 128977, updated on 1-Aug-2020

Summary

Official Symbol
C22orf39provided by HGNC
Official Full Name
chromosome 22 open reading frame 39provided by HGNC
Primary source
HGNC:HGNC:27012
See related
Ensembl:ENSG00000242259
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 8.1), thyroid (RPKM 7.7) and 25 other tissues See more
Orthologs

Genomic context

See C22orf39 in Genome Data Viewer
Location:
22q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (19440886..19447711, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (19428409..19435755, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene histone cell cycle regulator Neighboring gene RNA, 7SL, cytoplasmic 168, pseudogene Neighboring gene mitochondrial ribosomal protein L40 Neighboring gene uncharacterized LOC105372860 Neighboring gene ubiquitin recognition factor in ER associated degradation 1 Neighboring gene cell division cycle 45

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC74441, DKFZp686I08210

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166242.2NP_001159714.2  UPF0545 protein C22orf39 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC000068
    Consensus CDS
    CCDS54498.1
    Related
    ENSP00000439212.1, ENST00000542103.5
  2. NM_173793.5NP_776154.4  UPF0545 protein C22orf39 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC000068
    Consensus CDS
    CCDS33599.2
    Related
    ENSP00000479673.1, ENST00000611555.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    19440886..19447711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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