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Cpt2 carnitine palmitoyltransferase 2 [ Mus musculus (house mouse) ]

Gene ID: 12896, updated on 31-Jan-2019

Summary

Official Symbol
Cpt2provided by MGI
Official Full Name
carnitine palmitoyltransferase 2provided by MGI
Primary source
MGI:MGI:109176
See related
Ensembl:ENSMUSG00000028607
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CPTII; AI323697
Expression
Broad expression in adrenal adult (RPKM 110.0), duodenum adult (RPKM 94.1) and 22 other tissues See more
Orthologs

Genomic context

See Cpt2 in Genome Data Viewer
Location:
4 C7; 4 50.18 cM
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (107903982..107923589, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (107576587..107596194, complement)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene mago homolog, exon junction complex core component Neighboring gene CXXC motif containing zinc binding protein Neighboring gene predicted gene, 40221 Neighboring gene RIKEN cDNA 4930407G08 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
carnitine O-palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
carnitine O-palmitoyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity, transferring acyl groups IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
fatty acid beta-oxidation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cold-induced thermogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion HDA PubMed 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
carnitine O-palmitoyltransferase 2, mitochondrial
Names
CPT II
carnitine palmitoyltransferase II
NP_034079.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009949.2NP_034079.2  carnitine O-palmitoyltransferase 2, mitochondrial precursor

    See identical proteins and their annotated locations for NP_034079.2

    Status: VALIDATED

    Source sequence(s)
    AI853250, AK144441, BY325625, CD545813
    Consensus CDS
    CCDS18443.1
    UniProtKB/Swiss-Prot
    P52825
    UniProtKB/TrEMBL
    Q3UN55
    Related
    ENSMUSP00000030345.8, ENSMUST00000030345.14
    Conserved Domains (1) summary
    pfam00755
    Location:49648
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    107903982..107923589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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