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SNHG11 small nucleolar RNA host gene 11 [ Homo sapiens (human) ]

Gene ID: 128439, updated on 1-Jun-2020

Summary

Official Symbol
SNHG11provided by HGNC
Official Full Name
small nucleolar RNA host gene 11provided by HGNC
Primary source
HGNC:HGNC:25046
See related
Ensembl:ENSG00000174365
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf198; LINC00101; NCRNA00101
Summary
This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in testis (RPKM 6.8), prostate (RPKM 5.3) and 25 other tissues See more

Genomic context

See SNHG11 in Genome Data Viewer
Location:
20q11.23
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (38446654..38450921)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (37075297..37079564)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 17 Neighboring gene small nucleolar RNA, H/ACA box 71C Neighboring gene small nucleolar RNA, H/ACA box 71D Neighboring gene small nucleolar RNA, H/ACA box 71E Neighboring gene small nucleolar RNA, H/ACA box 60 Neighboring gene Ral GTPase activating protein non-catalytic subunit beta Neighboring gene microRNA 548o-2 Neighboring gene ribosomal protein S3 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 101
  • small nucleolar RNA host gene (non-protein coding) 11
  • small nucleolar RNA host gene 11 (non-protein coding)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003239.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF454939, AF497716, AK055434
    Related
    ENST00000656815.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    38446654..38450921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_139016.2: Suppressed sequence

    Description
    NM_139016.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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