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TMCO2 transmembrane and coiled-coil domains 2 [ Homo sapiens (human) ]

Gene ID: 127391, updated on 13-May-2022

Summary

Official Symbol
TMCO2provided by HGNC
Official Full Name
transmembrane and coiled-coil domains 2provided by HGNC
Primary source
HGNC:HGNC:23312
See related
Ensembl:ENSG00000188800 AllianceGenome:HGNC:23312
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ39G22.2
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 44.1) See more
Orthologs
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Genomic context

See TMCO2 in Genome Data Viewer
Location:
1p34.2
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (40247937..40251684)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (40117403..40121152)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (40713609..40717356)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378671 Neighboring gene RLF zinc finger Neighboring gene RNA, U6 small nuclear 1237, pseudogene Neighboring gene zinc metallopeptidase STE24 Neighboring gene collagen type IX alpha 2 chain

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC131705

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus HDA PubMed 

General protein information

Preferred Names
transmembrane and coiled-coil domain-containing protein 2
Names
testis tissue sperm-binding protein Li 35a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008740.4NP_001008740.1  transmembrane and coiled-coil domain-containing protein 2

    See identical proteins and their annotated locations for NP_001008740.1

    Status: VALIDATED

    Source sequence(s)
    BC108666, BU567634
    Consensus CDS
    CCDS30684.1
    UniProtKB/Swiss-Prot
    Q7Z6W1
    UniProtKB/TrEMBL
    A0A140VKB8
    Related
    ENSP00000361852.3, ENST00000372766.4
    Conserved Domains (1) summary
    pfam15844
    Location:9179
    TMCCDC2; Transmembrane and coiled-coil domain-containing protein 2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    40247937..40251684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    40117403..40121152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)