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Cdh13 cadherin 13 [ Mus musculus (house mouse) ]

Gene ID: 12554, updated on 8-Feb-2024

Summary

Official Symbol
Cdh13provided by MGI
Official Full Name
cadherin 13provided by MGI
Primary source
MGI:MGI:99551
See related
Ensembl:ENSMUSG00000031841 AllianceGenome:MGI:99551
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cdht; Tcad; 4932416G01Rik
Summary
This gene encodes a member of the cadherin family of calcium-dependent glycoproteins that mediate cell adhesion and regulate many morphogenetic events during development. The encoded preproprotein is further processed to generate a mature protein. This gene is highly expressed in the vasculature including endothelial cells, smooth muscle cells and pericytes, where the encoded protein binds to adiponectin and has been implicated in the modulation of angiogenesis. Multiple distinct genes of the cadherin family, including this gene, are found on chromosome 8. [provided by RefSeq, Nov 2015]
Expression
Broad expression in heart adult (RPKM 39.2), CNS E18 (RPKM 17.5) and 16 other tissues See more
Orthologs
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Genomic context

See Cdh13 in Genome Data Viewer
Location:
8 E1; 8 65.97 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (119010150..120051668)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (118140017..119324929)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39262 Neighboring gene STARR-seq mESC enhancer starr_22828 Neighboring gene STARR-seq mESC enhancer starr_22829 Neighboring gene predicted gene, 25200 Neighboring gene STARR-seq mESC enhancer starr_22830 Neighboring gene predicted gene, 51555 Neighboring gene STARR-seq mESC enhancer starr_22831 Neighboring gene STARR-seq mESC enhancer starr_22832 Neighboring gene STARR-seq mESC enhancer starr_22833 Neighboring gene STARR-seq mESC enhancer starr_22834 Neighboring gene STARR-seq mESC enhancer starr_22835 Neighboring gene predicted gene, 24035 Neighboring gene STARR-seq mESC enhancer starr_22837 Neighboring gene STARR-seq mESC enhancer starr_22838 Neighboring gene STARR-seq mESC enhancer starr_22840 Neighboring gene predicted gene, 53461 Neighboring gene STARR-seq mESC enhancer starr_22841 Neighboring gene predicted gene, 22999 Neighboring gene STARR-seq mESC enhancer starr_22842 Neighboring gene STARR-seq mESC enhancer starr_22844 Neighboring gene predicted gene, 31893 Neighboring gene STARR-seq mESC enhancer starr_22846 Neighboring gene STARR-seq mESC enhancer starr_22847 Neighboring gene STARR-positive B cell enhancer ABC_E10525 Neighboring gene predicted gene 45723 Neighboring gene heat shock factor binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (7)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables adiponectin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cadherin binding ISO
Inferred from Sequence Orthology
more info
 
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables lipoprotein particle binding ISO
Inferred from Sequence Orthology
more info
 
enables low-density lipoprotein particle binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Rac protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in Rho protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in adherens junction organization IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in cell morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell adhesion mediated by cadherin IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell-cell junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in endothelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules ISO
Inferred from Sequence Orthology
more info
 
involved_in keratinocyte proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in lamellipodium assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in localization within membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in low-density lipoprotein particle mediated signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in multicellular organism development IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of cell adhesion ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of calcium-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell-matrix adhesion ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of endothelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of positive chemotaxis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of smooth muscle cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of endocytosis ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of epidermal growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in sprouting angiogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in sprouting angiogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in GABA-ergic synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in caveola ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in neuron projection ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cadherin-13
Names
H-cadherin
T-cadherin
heart cadherin
NP_062681.2
XP_006530691.2
XP_036009632.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019707.5NP_062681.2  cadherin-13 preproprotein

    See identical proteins and their annotated locations for NP_062681.2

    Status: REVIEWED

    Source sequence(s)
    AI550332, AK048724, AV343697, BB075948, BM944611, CF735928, CX242668
    Consensus CDS
    CCDS52682.1
    UniProtKB/Swiss-Prot
    Q8BG11, Q9WTR5
    UniProtKB/TrEMBL
    Q8VDK4
    Related
    ENSMUSP00000113527.2, ENSMUST00000117160.2
    Conserved Domains (4) summary
    cd11304
    Location:488581
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:161243
    CA; Cadherin repeats
    pfam00028
    Location:368469
    Cadherin; Cadherin domain
    pfam08758
    Location:26112
    Cadherin_pro; Cadherin prodomain like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    119010150..120051668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153739.1XP_036009632.1  cadherin-13 isoform X2

    UniProtKB/TrEMBL
    Q8BS79
    Conserved Domains (2) summary
    smart00112
    Location:161243
    CA; Cadherin repeats
    pfam08758
    Location:26112
    Cadherin_pro; Cadherin prodomain like
  2. XM_006530628.4XP_006530691.2  cadherin-13 isoform X1

    UniProtKB/TrEMBL
    Q8VDK4
    Conserved Domains (4) summary
    cd11304
    Location:475568
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:148230
    CA; Cadherin repeats
    cl29226
    Location:577667
    Cadherin; Cadherin domain
    pfam08758
    Location:1399
    Cadherin_pro; Cadherin prodomain like