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LOC123885783 ubiquitin carboxyl-terminal hydrolase 2-like [ Trifolium pratense ]

Gene ID: 123885783, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123885783
Gene description
ubiquitin carboxyl-terminal hydrolase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Trifolium pratense
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Genomic context

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Location:
chromosome: LG1
Exon count:
6
Annotation release Status Assembly LG Location
100 current ARS_RC_1.1 (GCF_020283565.1) LG1 NC_060059.1 (15474714..15478937, complement)

Linkage Group LG1 - NC_060059.1Genomic Context describing neighboring genes Neighboring gene protein PELOTA 1-like Neighboring gene protein PELOTA 1-like Neighboring gene R3H domain-containing protein 1-like Neighboring gene uncharacterized LOC123907054 Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene uncharacterized LOC123884322 Neighboring gene zinc finger CCCH domain-containing protein ZFN-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_060059.1 Chromosome LG1 Reference ARS_RC_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification. Yates SA, et al. BMC Genomics, 2014 Jun 9. PMID 24912738, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trifolium pratense Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS_RC_1.1 Primary Assembly

Genomic

  1. NC_060059.1 Reference ARS_RC_1.1 Primary Assembly

    Range
    15474714..15478937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045935106.1 → XP_045791062.1  ubiquitin carboxyl-terminal hydrolase 2-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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