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LINC02963 long intergenic non-protein coding RNA 2963 [ Homo sapiens (human) ]

Gene ID: 123706542, updated on 28-Oct-2024

Summary

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Official Symbol
LINC02963provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2963provided by HGNC
Primary source
HGNC:HGNC:53945
See related
Ensembl:ENSG00000255652 AllianceGenome:HGNC:53945
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC02963 in Genome Data Viewer
Location:
12p11.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (34191037..34219211, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (34068683..34096839, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (34343972..34372146, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902915 Neighboring gene MPRA-validated peak1673 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:34258479-34258980 Neighboring gene MPRA-validated peak1674 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4343 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:34295166-34295666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:34295667-34296167 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:34318092-34318285 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_28337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:34371823-34372323 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:34371322-34371822 Neighboring gene MPRA-validated peak1675 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34426591-34427222 Neighboring gene RNA, 5S ribosomal pseudogene 357 Neighboring gene Sharpr-MPRA regulatory region 3620 Neighboring gene tubulin beta 8 class VIII pseudogene 4 Neighboring gene double homeobox 4 like 27 (pseudogene) Neighboring gene adenylate kinase 6 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34848041-34848760 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34848761-34849480 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:34841066-34841764 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34851272-34851915 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34851932-34852487 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34852488-34853042 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34854943-34855484 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:34855705-34856329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:37959881-37960382 Neighboring gene zinc finger protein 970, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Circulating LncRNAs Analysis in Patients with Type 2 Diabetes Reveals Novel Genes Influencing Glucose Metabolism and Islet β-Cell Function. Ruan Y, et al. Cell Physiol Biochem, 2018. PMID 29590649

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • lncRNA-p3134

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185896.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC140847
    Related
    ENST00000660987.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    34191037..34219211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    34068683..34096839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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