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LOC122633642 exosome component 10 [ Vespula pensylvanica (western yellowjacket) ]

Gene ID: 122633642, updated on 11-Apr-2024

Summary

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Gene symbol
LOC122633642
Gene description
exosome component 10
Locus tag
H0235_012880
Gene type
protein coding
RefSeq status
MODEL
Organism
Vespula pensylvanica
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Vespinae; Vespula
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Genomic context

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Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM1446617v1 (GCF_014466175.1) 12 NC_057696.1 (3076396..3080370, complement)

Chromosome 12 - NC_057696.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase 3 Neighboring gene uncharacterized LOC122633641 Neighboring gene pancreatic triacylglycerol lipase-like Neighboring gene popeye domain-containing protein 3-like Neighboring gene espin Neighboring gene homogentisate 1,2-dioxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057696.1 Chromosome 12 Reference ASM1446617v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in histone mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent antisense transcript catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent snRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent snoRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome component 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vespula pensylvanica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1446617v1

Genomic

  1. NC_057696.1 Reference ASM1446617v1

    Range
    3076396..3080370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043821763.1 → XP_043677698.1  exosome component 10

    UniProtKB/TrEMBL
    A0A834NLT6
    Conserved Domains (2) summary
    cd06147
    Location:261 → 450
    Rrp6p_like_exo; DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins
    cl02578
    Location:479 → 559
    HRDC; HRDC domain

  2. XM_043821762.1 → XP_043677697.1  exosome component 10

    UniProtKB/TrEMBL
    A0A834NLT6
    Conserved Domains (2) summary
    cd06147
    Location:261 → 450
    Rrp6p_like_exo; DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins
    cl02578
    Location:479 → 559
    HRDC; HRDC domain
Nucleotide Protein
Heading Accession and Version

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