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LOC122599658 ATP-dependent 6-phosphofructokinase 6-like [ Erigeron canadensis ]

Gene ID: 122599658, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122599658
Gene description
ATP-dependent 6-phosphofructokinase 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Erigeron canadensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Astereae; North American clade; Conyzinae; Erigeron
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Genomic context

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See LOC122599658 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
100 current C_canadensis_v1 (GCF_010389155.1) 5 NC_057765.1 (33927900..33935796, complement)

Chromosome 5 - NC_057765.1Genomic Context describing neighboring genes Neighboring gene lysine-specific demethylase JMJ25-like Neighboring gene uncharacterized LOC122601647 Neighboring gene small GTPase LIP1-like Neighboring gene uncharacterized LOC122600220

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057765.1 Chromosome 5 Reference C_canadensis_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphofructokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fructose 6-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent 6-phosphofructokinase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Erigeron canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_canadensis_v1 Primary Assembly

Genomic

  1. NC_057765.1 Reference C_canadensis_v1 Primary Assembly

    Range
    33927900..33935796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043772203.1 → XP_043628138.1  ATP-dependent 6-phosphofructokinase 6-like

    Conserved Domains (1) summary
    PLN02564
    Location:7 → 480
    PLN02564; 6-phosphofructokinase
Nucleotide Protein
Heading Accession and Version

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