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LOC122244434 CCR4-NOT transcription complex subunit 3-like [ Penaeus japonicus ]

Gene ID: 122244434, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122244434
Gene description
CCR4-NOT transcription complex subunit 3-like
See related
EnsemblRapid:LOC122244434
Gene type
protein coding
RefSeq status
MODEL
Organism
Penaeus japonicus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae; Penaeus
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Genomic context

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See LOC122244434 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Mj_TUMSAT_v1.0 (GCF_017312705.1) Unplaced Scaffold NW_025029648.1 (305285..351412)

NW_025029648.1Genomic Context describing neighboring genes Neighboring gene double-stranded RNA-specific editase 1-like Neighboring gene YTH domain-containing protein 1-like Neighboring gene transfer RNA leucine (anticodon UAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025029648 Unplaced Scaffold Reference Mj_TUMSAT_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Penaeus japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mj_TUMSAT_v1.0 Primary Assembly

Genomic

  1. NW_025029648.1 Reference Mj_TUMSAT_v1.0 Primary Assembly

    Range
    305285..351412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043002332.1 → XP_042858266.1  CCR4-NOT transcription complex subunit 3-like isoform X1

    Related
    XP_042858266.1, XM_043002332.1
    Conserved Domains (1) summary
    COG5665
    Location:12 → 232
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

  2. XM_043002359.1 → XP_042858293.1  CCR4-NOT transcription complex subunit 3-like isoform X4

    Related
    XP_042858293.1, XM_043002359.1
    Conserved Domains (1) summary
    COG5665
    Location:12 → 232
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

  3. XM_043002367.1 → XP_042858301.1  CCR4-NOT transcription complex subunit 3-like isoform X5

    Related
    XP_042858301.1, XM_043002367.1
    Conserved Domains (1) summary
    COG5665
    Location:12 → 727
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

  4. XM_043002349.1 → XP_042858283.1  CCR4-NOT transcription complex subunit 3-like isoform X3

    Related
    XP_042858283.1, XM_043002349.1
    Conserved Domains (1) summary
    COG5665
    Location:12 → 275
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]

  5. XM_043002340.1 → XP_042858274.1  CCR4-NOT transcription complex subunit 3-like isoform X2

    Related
    XP_042858274.1, XM_043002340.1
    Conserved Domains (1) summary
    COG5665
    Location:10 → 230
    COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Nucleotide Protein
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