U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC121745580 U2 small nuclear ribonucleoprotein A'-like [ Salvia splendens ]

Gene ID: 121745580, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC121745580
Gene description
U2 small nuclear ribonucleoprotein A'-like
Locus tag
SASPL_123148
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvia splendens
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salviinae; Salvia; Salvia subgen. Calosphace; core Calosphace
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC121745580 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
100 current SspV2 (GCF_004379255.1) 8 NC_056039.1 (11682027..11686647, complement)

Chromosome 8 - NC_056039.1Genomic Context describing neighboring genes Neighboring gene 4-coumarate--CoA ligase 2-like Neighboring gene protein FRIGIDA-like Neighboring gene chaperone protein ClpD, chloroplastic-like Neighboring gene respiratory burst oxidase homolog protein C-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_056039.1 Chromosome 8 Reference SspV2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U2 small nuclear ribonucleoprotein A'-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salvia splendens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SspV2 Primary Assembly

Genomic

  1. NC_056039.1 Reference SspV2 Primary Assembly

    Range
    11682027..11686647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042139535.1 → XP_041995469.1  U2 small nuclear ribonucleoprotein A'-like

    UniProtKB/TrEMBL
    A0A8X8XL60
    Conserved Domains (3) summary
    smart00446
    Location:128 → 146
    LRRcap; occurring C-terminal to leucine-rich repeats
    sd00031
    Location:46 → 65
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:23 → 126
    internalin_A; class 1 internalin InlA
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.