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Bmp10 bone morphogenetic protein 10 [ Mus musculus (house mouse) ]

Gene ID: 12154, updated on 2-Nov-2024

Summary

Official Symbol
Bmp10provided by MGI
Official Full Name
bone morphogenetic protein 10provided by MGI
Primary source
MGI:MGI:1338820
See related
Ensembl:ENSMUSG00000030046 AllianceGenome:MGI:1338820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
b2b2711Clo
Summary
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate the mature protein, which binds to the activin receptor-like kinase 1 (ALK1) and plays important roles in cardiovascular development including cardiomyocyte proliferation and regulation of heart size, closure of the ductus arteriosus, angiogenesis and ventricular trabeculation. Homozygous knockout mice for this gene exhibit impaired heart development and embryonic lethality. [provided by RefSeq, Aug 2016]
Expression
Biased expression in heart adult (RPKM 23.3) and liver E18 (RPKM 1.3) See more
Orthologs
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Genomic context

See Bmp10 in Genome Data Viewer
Location:
6 D1; 6 37.96 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87405976..87411494)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87428994..87434512)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene gastrokine 2 Neighboring gene gastrokine 3 Neighboring gene Rho GTPase activating protein 25 Neighboring gene STARR-positive B cell enhancer ABC_E861 Neighboring gene STARR-positive B cell enhancer ABC_E4843 Neighboring gene STARR-positive B cell enhancer ABC_E3663 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87492045-87492293 Neighboring gene STARR-seq mESC enhancer starr_16556 Neighboring gene STARR-positive B cell enhancer ABC_E680 Neighboring gene STARR-seq mESC enhancer starr_16558 Neighboring gene prokineticin receptor 1 Neighboring gene predicted gene, 34222

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1) 
  • Endonuclease-mediated (3) 
  • Targeted (9)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cytokine activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 
enables growth factor activity ISO
Inferred from Sequence Orthology
more info
 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 
enables hormone activity ISO
Inferred from Sequence Orthology
more info
 
enables receptor serine/threonine kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables receptor serine/threonine kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables telethonin binding IEA
Inferred from Electronic Annotation
more info
 
enables telethonin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in BMP signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in BMP signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within BMP signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in BMP signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in activin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in activin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in adult heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in atrial cardiac muscle tissue morphogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cardiac muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart trabecula formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within kidney development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cardiac muscle hypertrophy IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell growth ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of endothelial cell migration IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of endothelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of SMAD protein signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of SMAD protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cardiac muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cardiac muscle hypertrophy IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cardiac muscle hypertrophy ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cartilage development IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of cell proliferation involved in heart morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of sarcomere organization IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of sarcomere organization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cardiac muscle contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cardiac muscle hypertrophy in response to stress IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cardiac muscle hypertrophy in response to stress ISO
Inferred from Sequence Orthology
more info
 
involved_in sarcomere organization IEA
Inferred from Electronic Annotation
more info
 
involved_in sarcomere organization ISO
Inferred from Sequence Orthology
more info
 
involved_in ventricular cardiac muscle cell development IDA
Inferred from Direct Assay
more info
PubMed 
involved_in ventricular cardiac muscle tissue morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 
located_in Z disc ISO
Inferred from Sequence Orthology
more info
 
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
bone morphogenetic protein 10
Names
BMP-10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009756.3NP_033886.2  bone morphogenetic protein 10 preproprotein

    See identical proteins and their annotated locations for NP_033886.2

    Status: REVIEWED

    Source sequence(s)
    AC155726, BC145983
    Consensus CDS
    CCDS51838.1
    UniProtKB/Swiss-Prot
    A6H6S5, Q9R229, Q9Z1V8
    UniProtKB/TrEMBL
    B7ZN66
    Related
    ENSMUSP00000032125.6, ENSMUST00000032125.7
    Conserved Domains (2) summary
    pfam00019
    Location:318420
    TGF_beta; Transforming growth factor beta like domain
    pfam00688
    Location:55256
    TGFb_propeptide; TGF-beta propeptide

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87405976..87411494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)