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cps1 carbamoyl-phosphate synthase 1, mitochondrial [ Coregonus clupeaformis (lake whitefish) ]

Gene ID: 121536995, updated on 28-May-2024

Summary

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Gene symbol
cps1
Gene description
carbamoyl-phosphate synthase 1, mitochondrial
See related
EnsemblRapid:ENSCCFG00005027847
Gene type
protein coding
RefSeq status
MODEL
Organism
Coregonus clupeaformis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Coregoninae; Coregonus
Orthologs
human zebrafish all
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Genomic context

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See cps1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
38
Annotation release Status Assembly Chr Location
101 current ASM2061545v1 (GCF_020615455.1) 23 NC_059214.1 (37879254..38011522, complement)
100 previous assembly ASM1839867v1 (GCF_018398675.1) 23 NC_055089.1 (46242786..46377503)

Chromosome 23 - NC_059214.1Genomic Context describing neighboring genes Neighboring gene receptor tyrosine-protein kinase erbB-4-like Neighboring gene receptor tyrosine-protein kinase erbB-4-like Neighboring gene uncharacterized LOC121536151 Neighboring gene microtubule-associated protein 2 Neighboring gene myosin, light chain 1, alkali; skeletal, fast

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glutamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of carbamoyl-phosphate synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbamoyl-phosphate synthase [ammonia], mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Coregonus clupeaformis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2061545v1 Primary Assembly

Genomic

  1. NC_059214.1 Reference ASM2061545v1 Primary Assembly

    Range
    37879254..38011522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041844701.2 → XP_041700635.1  carbamoyl-phosphate synthase [ammonia], mitochondrial

    Related
    ENSCCFP00005070804.1, ENSCCFT00005076464.1
    Conserved Domains (2) summary
    TIGR01368
    Location:43 → 398
    CPSaseIIsmall; carbamoyl-phosphate synthase, small subunit
    TIGR01369
    Location:415 → 1475
    CPSaseII_lrg; carbamoyl-phosphate synthase, large subunit
Nucleotide Protein
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