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GTSF1 gametocyte specific factor 1 [ Homo sapiens (human) ]

Gene ID: 121355, updated on 11-Jun-2021

Summary

Official Symbol
GTSF1provided by HGNC
Official Full Name
gametocyte specific factor 1provided by HGNC
Primary source
HGNC:HGNC:26565
See related
Ensembl:ENSG00000170627 MIM:617484
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Cue110; FAM112B
Expression
Restricted expression toward testis (RPKM 49.6) See more
Orthologs
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Genomic context

See GTSF1 in Genome Data Viewer
Location:
12q13.13
Exon count:
11
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (54455952..54473602, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (54849741..54867386, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724050 Neighboring gene zinc finger protein 385A Neighboring gene integrin subunit alpha 5 Neighboring gene NCK associated protein 1 like Neighboring gene phosphodiesterase 1B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ32942

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
gametocyte-specific factor 1
Names
family with sequence similarity 112, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144594.3NP_653195.2  gametocyte-specific factor 1

    See identical proteins and their annotated locations for NP_653195.2

    Status: VALIDATED

    Source sequence(s)
    AK098819, BE503352
    Consensus CDS
    CCDS8881.1
    UniProtKB/Swiss-Prot
    Q8WW33
    UniProtKB/TrEMBL
    A0A024RB57
    Related
    ENSP00000304185.5, ENST00000305879.8
    Conserved Domains (1) summary
    pfam05253
    Location:1538
    zf-U11-48K; U11-48K-like CHHC zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    54455952..54473602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017018800.2XP_016874289.1  gametocyte-specific factor 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8WW33
    UniProtKB/TrEMBL
    A0A024RB57
    Conserved Domains (1) summary
    pfam05253
    Location:1538
    zf-U11-48K; U11-48K-like CHHC zinc finger
  2. XM_024448834.1XP_024304602.1  gametocyte-specific factor 1 isoform X1

    Related
    ENSP00000446485.1, ENST00000552397.5
    Conserved Domains (1) summary
    pfam05253
    Location:1538
    zf-U11-48K; U11-48K-like CHHC zinc finger

RNA

  1. XR_944498.1 RNA Sequence

    Related
    ENST00000546931.5
  2. XR_944499.2 RNA Sequence

  3. XR_944500.2 RNA Sequence

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