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PKP1 plakophilin 1 [ Onychostruthus taczanowskii (white-rumped snowfinch) ]

Gene ID: 121345621, updated on 22-Mar-2024

Summary

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Gene symbol
PKP1
Gene description
plakophilin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostruthus taczanowskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Passeridae; Onychostruthus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM1759005v1 (GCF_017590055.1) Unplaced Scaffold NW_024505229.1 (3570500..3615079, complement)

NW_024505229.1Genomic Context describing neighboring genes Neighboring gene ladinin 1 Neighboring gene troponin T2, cardiac type Neighboring gene immunoglobulin like and fibronectin type III domain containing 1 Neighboring gene transmembrane protein 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024505229 Unplaced Scaffold Reference ASM1759005v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plakophilin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Onychostruthus taczanowskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759005v1 Primary Assembly

Genomic

  1. NW_024505229.1 Reference ASM1759005v1 Primary Assembly

    Range
    3570500..3615079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041422708.1 → XP_041278642.1  plakophilin-1

    Conserved Domains (3) summary
    smart00185
    Location:284 → 324
    ARM; Armadillo/beta-catenin-like repeats
    PLN03200
    Location:243 → 344
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00043
    Location:255 → 280
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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