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LOC121299194 glutamate receptor ionotropic, kainate 5-like [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121299194, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121299194
Gene description
glutamate receptor ionotropic, kainate 5-like
See related
EnsemblRapid:ENSPAHG00005019219
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
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Genomic context

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See LOC121299194 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 24 NC_054557.1 (19239813..19273862)

Chromosome 24 - NC_054557.1Genomic Context describing neighboring genes Neighboring gene glycogen synthase kinase 3 alpha b Neighboring gene zinc finger protein 574 Neighboring gene sodium/potassium-transporting ATPase subunit alpha-3-like Neighboring gene Rab acceptor 1 (prenylated)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054557.1 Chromosome 24 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kainate selective glutamate receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of kainate selective glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: glutamate receptor ionotropic, kainate 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054557.1 Reference ASM1765450v1 Primary Assembly

    Range
    19239813..19273862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041226821.1 → XP_041082755.1  LOW QUALITY PROTEIN: glutamate receptor ionotropic, kainate 5-like

    Related
    ENSPAHP00005027324.1, ENSPAHT00005029239.1
    Conserved Domains (2) summary
    cd06394
    Location:104 → 482
    PBP1_iGluR_Kainate_KA1_2; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
    cl21456
    Location:495 → 865
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
Nucleotide Protein
Heading Accession and Version

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