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SLC17A6-DT SLC17A6 divergent transcript [ Homo sapiens (human) ]

Gene ID: 120883619, updated on 28-Oct-2024

Summary

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Official Symbol
SLC17A6-DTprovided by HGNC
Official Full Name
SLC17A6 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55514
See related
Ensembl:ENSG00000254768 AllianceGenome:HGNC:55514
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SLC17A6-DT in Genome Data Viewer
Location:
11p14.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (22283730..22338222, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (22404255..22458812, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (22305276..22359768, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723370 Neighboring gene uncharacterized LOC124902645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4532 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4531 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4530 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:22255998-22256992 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20787 Neighboring gene anoctamin 5 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:22306158-22307357 Neighboring gene solute carrier family 17 member 6 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20815 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_20847 Neighboring gene long intergenic non-protein coding RNA 1495

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186351.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040936, AC104009
    Related
    ENST00000528009.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    22283730..22338222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    22404255..22458812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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