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slitrk3a SLIT and NTRK-like family, member 3a [ Xiphias gladius (swordfish) ]

Gene ID: 120792083, updated on 21-Mar-2024

Summary

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Gene symbol
slitrk3a
Gene description
SLIT and NTRK-like family, member 3a
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
human zebrafish all
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Genomic context

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See slitrk3a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 7 NC_053406.1 (10596091..10598805, complement)

Chromosome 7 - NC_053406.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120792372 Neighboring gene uncharacterized LOC120792084 Neighboring gene sucrase-isomaltase Neighboring gene acetylcholinesterase-like Neighboring gene uncharacterized LOC120792175

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053406.1 Chromosome 7 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in GABA-ergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053406.1 Reference ASM1685928v1 Primary Assembly

    Range
    10596091..10598805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040131113.1 → XP_039987047.1  SLIT and NTRK-like protein 3

    Conserved Domains (4) summary
    smart00082
    Location:547 → 597
    LRRCT; Leucine rich repeat C-terminal domain
    COG4886
    Location:373 → 547
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:374 → 394
    LRR_RI; leucine-rich repeat [structural motif]
    cl15307
    Location:219 → 269
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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