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SLC6A4 solute carrier family 6 member 4 [ Dermochelys coriacea (leatherback sea turtle) ]

Gene ID: 119844560, updated on 8-May-2024

Summary

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Gene symbol
SLC6A4
Gene description
solute carrier family 6 member 4
See related
EnsemblRapid:ENSDCOG00030016175
Gene type
protein coding
RefSeq status
MODEL
Organism
Dermochelys coriacea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Dermochelyidae; Dermochelys
Orthologs
human mouse all
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Genomic context

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See SLC6A4 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
101 current rDerCor1.pri.v4 (GCF_009764565.3) 17 NC_050084.1 (2712870..2751474, complement)
100 previous assembly rDerCor1.pri.v3 (GCF_009764565.2) 17 NC_050084.1 (2712037..2751474, complement)

Chromosome 17 - NC_050084.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119844506 Neighboring gene U1 spliceosomal RNA Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene bleomycin hydrolase Neighboring gene transmembrane and immunoglobulin domain containing 1 Neighboring gene carboxypeptidase D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent serotonin transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dermochelys coriacea Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rDerCor1.pri.v4

Genomic

  1. NC_050084.1 Reference rDerCor1.pri.v4

    Range
    2712870..2751474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043499472.1 → XP_043355407.1  sodium-dependent serotonin transporter isoform X2

    Related
    ENSDCOP00030045558.1, ENSDCOT00030048836.1
    Conserved Domains (2) summary
    cd11513
    Location:118 → 654
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
    pfam03491
    Location:49 → 90
    5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus

  2. XM_038375565.2 → XP_038231493.2  sodium-dependent serotonin transporter isoform X1

    Related
    ENSDCOP00030045457.1, ENSDCOT00030048735.1
    Conserved Domains (1) summary
    cd11513
    Location:118 → 645
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
Nucleotide Protein
Heading Accession and Version

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