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tsku tsukushi small leucine rich proteoglycan homolog (Xenopus laevis) [ Pungitius pungitius (ninespine stickleback) ]

Gene ID: 119217345, updated on 21-Mar-2024

Summary

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Gene symbol
tsku
Gene description
tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)
Gene type
protein coding
RefSeq status
MODEL
Organism
Pungitius pungitius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Pungitius
Orthologs
human zebrafish all
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Genomic context

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See tsku in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_01 current fPunPun2.1 (GCF_949316345.1) 3 NC_084902.1 (3424299..3429347)
100 previous assembly NSP_V7 (GCF_902500615.1) Unplaced Scaffold NW_023616455.1 (26398035..26404534, complement)

Chromosome 3 - NC_084902.1Genomic Context describing neighboring genes Neighboring gene serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b Neighboring gene guanylate cyclase 2F, retinal Neighboring gene matrix metallopeptidase 13b Neighboring gene matrix metalloproteinase-20-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tsukushi

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949316345.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPunPun2.1

Genomic

  1. NC_084902.1 Reference fPunPun2.1

    Range
    3424299..3429347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037470846.2 → XP_037326743.2  tsukushi isoform X2

  2. XM_037470837.2 → XP_037326734.2  tsukushi isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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