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VP_RS19160 glycosyl hydrolase family 18 protein [ Vibrio parahaemolyticus RIMD 2210633 ]

Gene ID: 1191521, updated on 6-Oct-2023

Summary

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Gene symbol
VP_RS19160
Gene description
glycosyl hydrolase family 18 protein
Locus tag
VP_RS19160
Gene type
protein coding
Organism
Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Old locus tag
VPA0832
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Genomic context

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Location:
chromosome: 2
Sequence:
Chromosome: 2; NC_004605.1 (865637..868801)

Chromosome 2 - NC_004605.1Genomic Context describing neighboring genes Neighboring gene iron-containing alcohol dehydrogenase Neighboring gene AraC family transcriptional regulator Neighboring gene glucose-1-phosphate adenylyltransferase Neighboring gene formate--tetrahydrofolate ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_004605.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of a bacterial chitinase at 2.3 A resolution. Perrakis A, et al. Structure, 1994 Dec 15. PMID 7704527
  2. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article
  3. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae. Makino K, et al. Lancet, 2003 Mar 1. PMID 12620739

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
glycosyl hydrolase family 18 protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004605.1 Reference assembly

    Range
    865637..868801
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005479129.1 glycosyl hydrolase family 18 protein [Vibrio parahaemolyticus]

    See identical proteins and their annotated locations for WP_005479129.1

    UniProtKB/TrEMBL
    Q87HX4
    Conserved Domains (5) summary
    cd12204
    Location:999 → 1052
    CBD_like; Cellulose-binding domain, chitinase and related proteins
    COG3325
    Location:308 → 790
    ChiA; Chitinase, GH18 family [Carbohydrate transport and metabolism]
    COG3979
    Location:5 → 191
    COG3979; Chitodextrinase [Carbohydrate transport and metabolism]
    pfam06483
    Location:810 → 975
    ChiC; Chitinase C
    pfam17957
    Location:209 → 256
    Big_7; Bacterial Ig domain
Nucleotide Protein
Heading Accession and Version

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