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LINC00161 long intergenic non-protein coding RNA 161 [ Homo sapiens (human) ]

Gene ID: 118421, updated on 2-Mar-2021

Summary

Official Symbol
LINC00161provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 161provided by HGNC
Primary source
HGNC:HGNC:17138
See related
Ensembl:ENSG00000226935
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf100; Linc-USP16; NCRNA00161
Expression
Restricted expression toward prostate (RPKM 1.4) See more
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Genomic context

See LINC00161 in Genome Data Viewer
Location:
21q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (28539318..28540355)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (29911640..29912677)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724420 Neighboring gene uncharacterized LOC105372764 Neighboring gene N-6 adenine-specific DNA methyltransferase 1 Neighboring gene THUMP domain containing 1 pseudogene 1 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026552.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AF165147
    Related
    ENST00000412526.5
  2. NR_026553.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AF165147
    Related
    ENST00000455939.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    28539318..28540355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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