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adamtsl2 ADAMTS-like 2 [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118325668, updated on 20-Mar-2024

Summary

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Gene symbol
adamtsl2
Gene description
ADAMTS-like 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339718.1 (21227159..21247931, complement)

NW_023339718.1Genomic Context describing neighboring genes Neighboring gene natterin-3-like Neighboring gene protein FAM163B Neighboring gene myomaker, myoblast fusion factor Neighboring gene solute carrier family 2 member 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023339718 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023339718.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    21227159..21247931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035658429.1 → XP_035514322.1  ADAMTS-like protein 2

    Conserved Domains (4) summary
    smart00209
    Location:55 → 111
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:221 → 335
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:908 → 939
    PLAC; PLAC (protease and lacunin) domain
    pfam19030
    Location:849 → 899
    TSP1_ADAMTS; Thrombospondin type 1 domain
Nucleotide Protein
Heading Accession and Version

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