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LOC117853884 nicotianamine aminotransferase 1-like [ Setaria viridis ]

Gene ID: 117853884, updated on 24-Apr-2024

Summary

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Gene symbol
LOC117853884
Gene description
nicotianamine aminotransferase 1-like
Locus tag
SEVIR_4G127400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria viridis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC117853884 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Setaria_viridis_v2.0 (GCF_005286985.1) 4 NC_048266.1 (23308924..23314070, complement)

Chromosome 4 - NC_048266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117853860 Neighboring gene 60S ribosomal protein L27-3-like Neighboring gene cellulose synthase-like protein D5 Neighboring gene probable aquaporin TIP2-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048266.1 Chromosome 4 Reference Setaria_viridis_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nicotianamine aminotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_viridis_v2.0 Primary Assembly

Genomic

  1. NC_048266.1 Reference Setaria_viridis_v2.0 Primary Assembly

    Range
    23308924..23314070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034736165.1 → XP_034592056.1  nicotianamine aminotransferase 1-like

    UniProtKB/TrEMBL
    A0A4U6V1D6, A0A4U6V2L9

  2. XM_034736164.1 → XP_034592055.1  nicotianamine aminotransferase 1-like

    UniProtKB/TrEMBL
    A0A4U6V1D6, A0A4U6V2L9
Nucleotide Protein
Heading Accession and Version

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