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LOC117845550 rRNA-processing protein UTP23 homolog [ Setaria viridis ]

Gene ID: 117845550, updated on 24-Apr-2024

Summary

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Gene symbol
LOC117845550
Gene description
rRNA-processing protein UTP23 homolog
Locus tag
SEVIR_2G298900v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria viridis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Setaria_viridis_v2.0 (GCF_005286985.1) 2 NC_048264.1 (37276699..37279150, complement)

Chromosome 2 - NC_048264.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor IIB Neighboring gene triosephosphate isomerase, chloroplastic Neighboring gene E3 ubiquitin ligase BIG BROTHER-related-like Neighboring gene uncharacterized LOC117846610

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048264.1 Chromosome 2 Reference Setaria_viridis_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA-processing protein UTP23 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_viridis_v2.0 Primary Assembly

Genomic

  1. NC_048264.1 Reference Setaria_viridis_v2.0 Primary Assembly

    Range
    37276699..37279150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034726611.1 → XP_034582502.1  rRNA-processing protein UTP23 homolog isoform X1

    UniProtKB/TrEMBL
    A0A4U6VYN0
    Conserved Domains (1) summary
    cd08553
    Location:26 → 150
    PIN_Fcf1-like; VapC-like PIN domain of rRNA-processing proteins, Fcf1 (Utp24, YDR339C), Utp23 (YOR004W), and other eukaryotic homologs

  2. XM_034726612.1 → XP_034582503.1  rRNA-processing protein UTP23 homolog isoform X2

    UniProtKB/TrEMBL
    A0A4U6VYW2
Nucleotide Protein
Heading Accession and Version

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