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LOC117402353 serum response factor-like [ Acipenser ruthenus (sterlet) ]

Gene ID: 117402353, updated on 26-Oct-2023

Summary

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Gene symbol
LOC117402353
Gene description
serum response factor-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Acipenser ruthenus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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Genomic context

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See LOC117402353 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 5 NC_081193.1 (23548330..23585215, complement)
101 previous assembly ASM1064508v1 (GCF_010645085.1) 5 NC_048327.1 (65421959..65458234)

Chromosome 5 - NC_081193.1Genomic Context describing neighboring genes Neighboring gene cullin-9-like Neighboring gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 Neighboring gene inactive tyrosine-protein kinase 7-like Neighboring gene heme-binding protein soul4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serum response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serum response factor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAciRut3.2 maternal haplotype Primary Assembly

Genomic

  1. NC_081193.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

    Range
    23548330..23585215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059023850.1 → XP_058879833.1  serum response factor-like isoform X1

  2. XM_034003412.3 → XP_033859303.1  serum response factor-like isoform X2

    Conserved Domains (2) summary
    COG5068
    Location:183 → 418
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:185 → 266
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  3. XM_034003413.3 → XP_033859304.1  serum response factor-like isoform X3

    UniProtKB/TrEMBL
    A0A444UJ93
    Conserved Domains (2) summary
    COG5068
    Location:183 → 424
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:185 → 266
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  4. XM_034003414.3 → XP_033859305.1  serum response factor-like isoform X4

    UniProtKB/TrEMBL
    A0A444UJ93
    Conserved Domains (2) summary
    COG5068
    Location:183 → 424
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:185 → 266
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
Nucleotide Protein
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