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paf1 PAF1 homolog, Paf1/RNA polymerase II complex component [ Sander lucioperca (pikeperch) ]

Gene ID: 116041134, updated on 18-Mar-2024

Summary

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Gene symbol
paf1
Gene description
PAF1 homolog, Paf1/RNA polymerase II complex component
See related
Ensembl:ENSSLUG00000025323
Gene type
protein coding
RefSeq status
MODEL
Organism
Sander lucioperca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Luciopercinae; Sander
Orthologs
human zebrafish all
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Genomic context

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See paf1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
101 current SLUC_FBN_1.2 (GCF_008315115.2) 5 NC_050177.1 (13590623..13598785)
100 previous assembly SLUC_FBN_1 (GCF_008315115.1) Unplaced Scaffold NW_022173390.1 (49099..56826, complement)

Chromosome 5 - NC_050177.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118494996 Neighboring gene TAO kinase 1a Neighboring gene uncharacterized LOC116041135 Neighboring gene protein Smaug homolog 2 Neighboring gene glia maturation factor, gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II-associated factor 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sander lucioperca Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLUC_FBN_1.2 Primary Assembly

Genomic

  1. NC_050177.1 Reference SLUC_FBN_1.2 Primary Assembly

    Range
    13590623..13598785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031286994.2 → XP_031142854.1  RNA polymerase II-associated factor 1 homolog

    UniProtKB/TrEMBL
    A0A8D0AMT9
    Related
    ENSSLUP00000059196.1
    Conserved Domains (1) summary
    pfam03985
    Location:31 → 407
    Paf1
Nucleotide Protein
Heading Accession and Version

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