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LOC115975711 DNA ligase 4 [ Quercus lobata ]

Gene ID: 115975711, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115975711
Gene description
DNA ligase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Quercus lobata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
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Genomic context

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Location:
chromosome: 2
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ValleyOak3.0 (GCF_001633185.1) 2 NC_044905.1 (46730109..46784079, complement)

Chromosome 2 - NC_044905.1Genomic Context describing neighboring genes Neighboring gene probable inactive purple acid phosphatase 28 Neighboring gene uncharacterized LOC115975710 Neighboring gene uncharacterized LOC115965350 Neighboring gene putative clathrin assembly protein At5g57200

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044905.1 Chromosome 2 Reference ValleyOak3.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA ligation involved in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase IV complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Quercus lobata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ValleyOak3.0

Genomic

  1. NC_044905.1 Reference ValleyOak3.0

    Range
    46730109..46784079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031096608.1 → XP_030952468.1  DNA ligase 4

    Conserved Domains (4) summary
    cd07903
    Location:214 → 447
    Adenylation_DNA_ligase_IV; Adenylation domain of DNA Ligase IV
    TIGR00574
    Location:61 → 601
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    cd17722
    Location:654 → 740
    BRCT_DNA_ligase_IV_rpt1; first BRCT domain of DNA ligase 4 (LIG4) and similar proteins
    cl00038
    Location:800 → 896
    BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
Nucleotide Protein
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