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LOC115717415 probable helicase CHR10 [ Cannabis sativa ]

Gene ID: 115717415, updated on 6-Jun-2024

Summary

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Gene symbol
LOC115717415
Gene description
probable helicase CHR10
Gene type
protein coding
RefSeq status
MODEL
Organism
Cannabis sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Genomic context

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See LOC115717415 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_11 current ASM2916894v1 (GCF_029168945.1) 5 NC_083605.1 (27934684..27953773, complement)
100.20200513 previous assembly cs10 (GCF_900626175.2) 5 NC_044374.1 (32011918..32026269, complement)

Chromosome 5 - NC_083605.1Genomic Context describing neighboring genes Neighboring gene type III polyketide synthase A Neighboring gene uncharacterized LOC133038250 Neighboring gene uncharacterized LOC115717704 Neighboring gene protein ALP1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome and transcriptome of Cannabis sativa. van Bakel H, et al. Genome Biol, 2011 Oct 20. PMID 22014239, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable helicase CHR10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029168945.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2916894v1 Primary Assembly

Genomic

  1. NC_083605.1 Reference ASM2916894v1 Primary Assembly

    Range
    27934684..27953773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061115577.1 → XP_060971560.1  probable helicase CHR10

    UniProtKB/TrEMBL
    A0A7J6I5N0
Nucleotide Protein
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