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LOC115611356 pancreatic alpha-amylase-like [ Strigops habroptila (Kakapo) ]

Gene ID: 115611356, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115611356
Gene description
pancreatic alpha-amylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strigops habroptila
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittacidae; Strigops
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Genomic context

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See LOC115611356 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
101 current bStrHab1.2.pri (GCF_004027225.2) 8 NC_044284.2 (30295..39831, complement)
100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 8 NC_044284.1 (30295..39831, complement)

Chromosome 8 - NC_044284.2Genomic Context describing neighboring genes Neighboring gene pancreatic alpha-amylase Neighboring gene pancreatic alpha-amylase-like Neighboring gene RNA binding region (RNP1, RRM) containing 3 Neighboring gene collagen type XI alpha 1 chain Neighboring gene uncharacterized LOC115611600

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pancreatic alpha-amylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bStrHab1.2.pri

Genomic

  1. NC_044284.2 Reference bStrHab1.2.pri

    Range
    30295..39831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030494133.1 → XP_030349993.1  pancreatic alpha-amylase-like isoform X1

    Conserved Domains (2) summary
    cd11317
    Location:76 → 468
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:475 → 562
    Aamy_C; Aamy_C domain

  2. XM_030494134.1 → XP_030349994.1  pancreatic alpha-amylase-like isoform X2

    UniProtKB/TrEMBL
    A0A672UC97
    Conserved Domains (2) summary
    cd11317
    Location:25 → 417
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:424 → 511
    Aamy_C; Aamy_C domain

  3. XM_030494139.1 → XP_030349999.1  pancreatic alpha-amylase-like isoform X3

    UniProtKB/TrEMBL
    A0A672UD79
    Conserved Domains (2) summary
    cd11317
    Location:24 → 385
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:392 → 479
    Aamy_C; Aamy_C domain

  4. XM_030494137.2 → XP_030349997.1  pancreatic alpha-amylase-like isoform X3

    UniProtKB/TrEMBL
    A0A672UD79
    Conserved Domains (2) summary
    cd11317
    Location:24 → 385
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:392 → 479
    Aamy_C; Aamy_C domain

  5. XM_030494138.1 → XP_030349998.1  pancreatic alpha-amylase-like isoform X3

    UniProtKB/TrEMBL
    A0A672UD79
    Conserved Domains (2) summary
    cd11317
    Location:24 → 385
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:392 → 479
    Aamy_C; Aamy_C domain

  6. XM_030494135.1 → XP_030349995.1  pancreatic alpha-amylase-like isoform X2

    UniProtKB/TrEMBL
    A0A672UC97
    Conserved Domains (2) summary
    cd11317
    Location:25 → 417
    AmyAc_bac_euk_AmyA; Alpha amylase catalytic domain found in bacterial and eukaryotic Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    smart00632
    Location:424 → 511
    Aamy_C; Aamy_C domain
Nucleotide Protein
Heading Accession and Version

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