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LOC115494068 tigger transposable element-derived protein 3 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 115494068, updated on 7-Dec-2023

Summary

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Gene symbol
LOC115494068
Gene description
tigger transposable element-derived protein 3
See related
Ensembl:ENSTGUG00000019458
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Also known as
ZNF589
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Genomic context

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See LOC115494068 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 2 NC_044213.2 (929703..932698)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 2 NC_045000.1 (955294..958363)

Chromosome 2 - NC_044213.2Genomic Context describing neighboring genes Neighboring gene cell division cycle 25A Neighboring gene E3 ubiquitin-protein ligase TRIM7 Neighboring gene uncharacterized LOC100224667 Neighboring gene uncharacterized LOC115494071 Neighboring gene uncharacterized LOC115494075

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tigger transposable element-derived protein 3
Names
zinc finger protein 589

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044213.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    929703..932698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041714197.1 → XP_041570131.1  tigger transposable element-derived protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A674GGE0
    Conserved Domains (3) summary
    cl12115
    Location:310 → 367
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:240 → 292
    HTH; Helix-turn-helix domains
    cl21549
    Location:423 → 583
    rve; Integrase core domain

  2. XM_030266919.3 → XP_030122779.3  tigger transposable element-derived protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A674H5N1
    Conserved Domains (3) summary
    COG1846
    Location:203 → 281
    MarR; DNA-binding transcriptional regulator, MarR family [Transcription]
    cl12115
    Location:273 → 330
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21549
    Location:386 → 546
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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