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TPHA0I00970 hypothetical protein [ Tetrapisispora phaffii CBS 4417 ]

Gene ID: 11532849, updated on 22-Oct-2023

Summary

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Gene symbol
TPHA0I00970
Gene description
hypothetical protein
Locus tag
TPHA_0I00970
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Tetrapisispora phaffii CBS 4417 (strain: type strain:CBS 4417)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Tetrapisispora
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Genomic context

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Location:
chromosome: 9
Exon count:
1
Sequence:
Chromosome: 9; NC_016528.1 (218510..221005, complement)

Chromosome 9 - NC_016528.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016528.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_003687037.1
  • similar to Saccharomyces cerevisiae TRL1 (YJL087C); ancestral locus Anc_1.280

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016528.1 Reference assembly

    Range
    218510..221005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003686989.1 → XP_003687037.1  hypothetical protein TPHA_0I00970 [Tetrapisispora phaffii CBS 4417]

    See identical proteins and their annotated locations for XP_003687037.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8BXH5
    Conserved Domains (4) summary
    COG5324
    Location:4 → 821
    Trl1; tRNA splicing ligase [Translation, ribosomal structure and biogenesis]
    pfam08302
    Location:563 → 831
    tRNA_lig_CPD; Fungal tRNA ligase phosphodiesterase domain
    pfam08303
    Location:390 → 557
    tRNA_lig_kinase; tRNA ligase kinase domain
    pfam09511
    Location:61 → 289
    RNA_lig_T4_1; RNA ligase
Nucleotide Protein
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