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esr1 estrogen receptor 1 [ Oncorhynchus nerka (sockeye salmon) ]

Gene ID: 115139262, updated on 9-May-2024

Summary

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Gene symbol
esr1
Gene description
estrogen receptor 1
See related
EnsemblRapid:ENSONEG00000032260
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus nerka
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See esr1 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
10
Annotation release Status Assembly LG Location
RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG13 NC_088408.1 (27654748..27678993)
100 previous assembly Oner_1.0 (GCF_006149115.1) LG13 NC_042547.1 (7621613..7645274, complement)

Linkage Group LG13 - NC_088408.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 2b Neighboring gene acidic residue methyltransferase 1 Neighboring gene spectrin repeat containing, nuclear envelope 1a Neighboring gene myc target 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiling and environmental contaminant assessment of migrating Pacific salmon in the Fraser River watershed of British Columbia. Veldhoen N, et al. Aquat Toxicol, 2010 May 5. PMID 19811841

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables estrogen response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to estrogen stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular estrogen receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor
Names
ER alpha
estrogen receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oner_Uvic_2.0 Primary Assembly

Genomic

  1. NC_088408.1 Reference Oner_Uvic_2.0 Primary Assembly

    Range
    27654748..27678993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029676448.2 → XP_029532308.2  estrogen receptor isoform X3

  2. XM_029676447.2 → XP_029532307.2  estrogen receptor isoform X3

  3. XM_029676446.2 → XP_029532306.2  estrogen receptor isoform X3

  4. XM_029676445.2 → XP_029532305.2  estrogen receptor isoform X3

  5. XM_029676443.2 → XP_029532303.2  estrogen receptor isoform X1

  6. XM_029676444.2 → XP_029532304.2  estrogen receptor isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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