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slc6a4a solute carrier family 6 member 4a [ Betta splendens (Siamese fighting fish) ]

Gene ID: 114867618, updated on 12-Sep-2024

Summary

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Gene symbol
slc6a4a
Gene description
solute carrier family 6 member 4a
See related
EnsemblRapid:ENSBSLG00000012810
Gene type
protein coding
RefSeq status
MODEL
Organism
Betta splendens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Osphronemidae; Betta
Also known as
slc6a4
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_04 current fBetSpl5.4 (GCF_900634795.4) 13 NC_040893.2 (13891773..13905028)
101 previous assembly fBetSpl5.3 (GCF_900634795.3) 13 NC_040893.1 (14080177..14091020)

Chromosome 13 - NC_040893.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114867732 Neighboring gene bleomycin hydrolase Neighboring gene uncharacterized LOC114867621 Neighboring gene uncharacterized LOC114867620 Neighboring gene slingshot protein phosphatase 2a Neighboring gene ankyrin repeat domain 13B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 6 member 4a
Names
solute carrier family 6 member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_900634795.4-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fBetSpl5.4 Primary Assembly

Genomic

  1. NC_040893.2 Reference fBetSpl5.4 Primary Assembly

    Range
    13891773..13905028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055513960.1 → XP_055369935.1  solute carrier family 6 member 4a

    UniProtKB/TrEMBL
    A0A6P7P7Y5
    Related
    ENSBSLP00000028481.1, ENSBSLT00000031639.3

  2. XM_029170454.3 → XP_029026287.1  solute carrier family 6 member 4a

    UniProtKB/TrEMBL
    A0A6P7P7Y5
    Conserved Domains (1) summary
    cl00456
    Location:121 → 658
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_029170455.3 → XP_029026288.1  solute carrier family 6 member 4a

    UniProtKB/TrEMBL
    A0A6P7P7Y5
    Conserved Domains (1) summary
    cl00456
    Location:121 → 658
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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