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ZBED9 zinc finger BED-type containing 9 [ Homo sapiens (human) ]

Gene ID: 114821, updated on 11-Jun-2021

Summary

Official Symbol
ZBED9provided by HGNC
Official Full Name
zinc finger BED-type containing 9provided by HGNC
Primary source
HGNC:HGNC:13851
See related
Ensembl:ENSG00000232040 MIM:615254
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SCAND3; ZNF452; Buster4; ZFP38-L; ZNF305P2; dJ1186N24.3
Expression
Biased expression in testis (RPKM 5.0), thyroid (RPKM 0.8) and 7 other tissues See more
Orthologs
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Genomic context

See ZBED9 in Genome Data Viewer
Location:
6p22.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (28568288..28616202, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (28538312..28583979, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene tRNA-Ile (anticodon TAT) 3-1 Neighboring gene uncharacterized LOC107986586 Neighboring gene tRNA-Arg (anticodon TCG) 5-1 Neighboring gene tRNA-Gln (anticodon TTG) 2-1 Neighboring gene tRNA-Ser (anticodon GCT) 4-1 Neighboring gene tRNA-Ala (anticodon AGC) 3-1 Neighboring gene tRNA-Ala (anticodon TGC) 9-1 Neighboring gene uncharacterized LOC105374996 Neighboring gene tRNA-Ala (anticodon TGC) 2-1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ31087, KIAA1925, MGC131782, MGC133310, MGC133311, DKFZp434N092

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of epithelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SCAN domain-containing protein 3
Names
SCAN domain containing 3
transposon-derived Buster4 transposase-like protein
zinc finger BED domain-containing protein 9
zinc finger protein 305 pseudogene 2
zinc finger protein 452

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329616.2NP_001316545.1  SCAN domain-containing protein 3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL049543, AL121932, AY517631, DB636313
    Consensus CDS
    CCDS87376.1
    UniProtKB/Swiss-Prot
    Q6R2W3
    Related
    ENSP00000494942.1, ENST00000646382.1
    Conserved Domains (4) summary
    pfam05699
    Location:10971144
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam10481
    Location:274416
    CENP-F_N; Cenp-F N-terminal domain
    pfam14291
    Location:731828
    DUF4371; Domain of unknown function (DUF4371)
    cl21549
    Location:225325
    rve; Integrase core domain
  2. NM_052923.2NP_443155.1  SCAN domain-containing protein 3 isoform 1

    See identical proteins and their annotated locations for NP_443155.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL049543, AY517631
    Consensus CDS
    CCDS34355.1
    UniProtKB/Swiss-Prot
    Q6R2W3
    UniProtKB/TrEMBL
    A0A1U9X8W9
    Related
    ENSP00000395259.2, ENST00000452236.3
    Conserved Domains (2) summary
    smart00431
    Location:48160
    SCAN; leucine rich region
    cl21549
    Location:376476
    rve; Integrase core domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    28568288..28616202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011514288.2XP_011512590.1  SCAN domain-containing protein 3 isoform X2

    See identical proteins and their annotated locations for XP_011512590.1

    Conserved Domains (4) summary
    pfam05699
    Location:10521099
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam10481
    Location:229371
    CENP-F_N; Cenp-F N-terminal domain
    pfam14291
    Location:686783
    DUF4371; Domain of unknown function (DUF4371)
    cl21549
    Location:180280
    rve; Integrase core domain
  2. XM_011514287.2XP_011512589.1  SCAN domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011512589.1

    Conserved Domains (4) summary
    pfam05699
    Location:10971144
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam10481
    Location:274416
    CENP-F_N; Cenp-F N-terminal domain
    pfam14291
    Location:731828
    DUF4371; Domain of unknown function (DUF4371)
    cl21549
    Location:225325
    rve; Integrase core domain
  3. XM_011514286.2XP_011512588.1  SCAN domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011512588.1

    Conserved Domains (4) summary
    pfam05699
    Location:10971144
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam10481
    Location:274416
    CENP-F_N; Cenp-F N-terminal domain
    pfam14291
    Location:731828
    DUF4371; Domain of unknown function (DUF4371)
    cl21549
    Location:225325
    rve; Integrase core domain
  4. XM_011514285.2XP_011512587.1  SCAN domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011512587.1

    Conserved Domains (4) summary
    pfam05699
    Location:10971144
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam10481
    Location:274416
    CENP-F_N; Cenp-F N-terminal domain
    pfam14291
    Location:731828
    DUF4371; Domain of unknown function (DUF4371)
    cl21549
    Location:225325
    rve; Integrase core domain
  5. XM_011514284.2XP_011512586.1  SCAN domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011512586.1

    Conserved Domains (4) summary
    pfam05699
    Location:10971144
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam10481
    Location:274416
    CENP-F_N; Cenp-F N-terminal domain
    pfam14291
    Location:731828
    DUF4371; Domain of unknown function (DUF4371)
    cl21549
    Location:225325
    rve; Integrase core domain

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    60416..106077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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