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LOC11424246 PAP-specific phosphatase HAL2-like [ Medicago truncatula (barrel medic) ]

Gene ID: 11424246, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11424246
Gene description
PAP-specific phosphatase HAL2-like
Locus tag
MtrunA17_Chr2g0281361
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (3114961..3119895)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (3108769..3113749)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-2 Neighboring gene endonuclease 1 Neighboring gene lysine histidine transporter-like 8 Neighboring gene keratin, type II cytoskeletal 1 Neighboring gene NDR1/HIN1-like protein 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'(2'),5'-bisphosphate nucleotidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfate assimilation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAP-specific phosphatase HAL2-like
Names
3'(2'),5'-bisphosphate nucleotidase
putative 3'(2'),5'-bisphosphate nucleotidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    3114961..3119895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003593423.4 → XP_003593471.1  PAP-specific phosphatase HAL2-like

    See identical proteins and their annotated locations for XP_003593471.1

    UniProtKB/TrEMBL
    G7ILG2
    Conserved Domains (1) summary
    cl00289
    Location:91 → 466
    FIG; FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in ...
Nucleotide Protein
Heading Accession and Version

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