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rb1 retinoblastoma 1 [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113541559, updated on 6-Jun-2024

Summary

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Gene symbol
rb1
Gene description
retinoblastoma 1
Locus tag
PHYPO_G00061120
See related
EnsemblRapid:ENSPHYG00025020462
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 15 NC_069724.1 (9099823..9133727)

Chromosome 15 - NC_069724.1Genomic Context describing neighboring genes Neighboring gene zw10 kinetochore protein Neighboring gene dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) Neighboring gene lysophosphatidic acid receptor 6-like Neighboring gene lysophosphatidic acid receptor 6b Neighboring gene cysteinyl leukotriene receptor 2a Neighboring gene duboraya

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069724.1 Chromosome 15 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis involved in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of G1/S transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rb-E2F complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoblastoma-associated protein
Names
RB transcriptional corepressor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069724.1 Reference fPanHyp1.pri

    Range
    9099823..9133727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026938607.3 → XP_026794408.3  retinoblastoma-associated protein

    UniProtKB/TrEMBL
    A0A5N5M1F1
    Related
    ENSPHYP00025049146.1, ENSPHYT00025052794.1
Nucleotide Protein
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