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yrk Yes-related kinase [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113536285, updated on 11-Apr-2024

Summary

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Gene symbol
yrk
Gene description
Yes-related kinase
Locus tag
PHYPO_G00134990
See related
EnsemblRapid:ENSPHYG00025023658
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
Also known as
fgr
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 23 NC_069732.1 (12845988..12862927)

Chromosome 23 - NC_069732.1Genomic Context describing neighboring genes Neighboring gene matrilin 1 Neighboring gene sestrin 2 Neighboring gene AT hook, DNA binding motif, containing 1 Neighboring gene probable methyltransferase-like protein 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069732.1 Chromosome 23 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables non-membrane spanning protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein kinase Fgr
Names
FGR proto-oncogene, Src family tyrosine kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069732.1 Reference fPanHyp1.pri

    Range
    12845988..12862927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026930145.3 → XP_026785946.1  tyrosine-protein kinase Fgr isoform X1

    UniProtKB/TrEMBL
    A0A5N5KKM5
    Conserved Domains (3) summary
    cd14203
    Location:279 → 526
    PTKc_Src_Fyn_like; Catalytic domain of a subset of Src kinase-like Protein Tyrosine Kinases
    cl15255
    Location:149 → 247
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:89 → 146
    SH3; Src Homology 3 domain superfamily

  2. XM_026930144.3 → XP_026785945.1  tyrosine-protein kinase Fgr isoform X1

    UniProtKB/TrEMBL
    A0A5N5KKM5
    Related
    ENSPHYP00025054882.1, ENSPHYT00025060061.1
    Conserved Domains (3) summary
    cd14203
    Location:279 → 526
    PTKc_Src_Fyn_like; Catalytic domain of a subset of Src kinase-like Protein Tyrosine Kinases
    cl15255
    Location:149 → 247
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:89 → 146
    SH3; Src Homology 3 domain superfamily

  3. XM_026930148.3 → XP_026785949.1  tyrosine-protein kinase Fgr isoform X2

    UniProtKB/TrEMBL
    A0A5N5KKM5
    Related
    ENSPHYP00025054889.1, ENSPHYT00025060068.1
    Conserved Domains (3) summary
    cd14203
    Location:276 → 523
    PTKc_Src_Fyn_like; Catalytic domain of a subset of Src kinase-like Protein Tyrosine Kinases
    cl15255
    Location:149 → 249
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:89 → 146
    SH3; Src Homology 3 domain superfamily

  4. XM_026930146.3 → XP_026785947.1  tyrosine-protein kinase Fgr isoform X1

    UniProtKB/TrEMBL
    A0A5N5KKM5
    Related
    ENSPHYP00025054866.1, ENSPHYT00025060045.1
    Conserved Domains (3) summary
    cd14203
    Location:279 → 526
    PTKc_Src_Fyn_like; Catalytic domain of a subset of Src kinase-like Protein Tyrosine Kinases
    cl15255
    Location:149 → 247
    SH2; Src homology 2 (SH2) domain
    cl17036
    Location:89 → 146
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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