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LOC113524444 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B [ Pangasianodon hypophthalmus (striped catfish) ]

Gene ID: 113524444, updated on 3-Apr-2024

Summary

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Gene symbol
LOC113524444
Gene description
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
Locus tag
PHYPO_G00184620
See related
EnsemblRapid:ENSPHYG00025000868
Gene type
protein coding
RefSeq status
MODEL
Organism
Pangasianodon hypophthalmus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon
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Genomic context

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Location:
chromosome: 20
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_02 current fPanHyp1.pri (GCF_027358585.1) 20 NC_069729.1 (21963997..21973818, complement)

Chromosome 20 - NC_069729.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 1A Neighboring gene neuropeptide FF-amide peptide precursor like Neighboring gene NCK associated protein 1 like Neighboring gene sp1 transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_069729.1 Chromosome 20 Reference fPanHyp1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027358585.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPanHyp1.pri

Genomic

  1. NC_069729.1 Reference fPanHyp1.pri

    Range
    21963997..21973818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034302118.2 → XP_034158009.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X2

    UniProtKB/TrEMBL
    A0A5N5JDI0
    Related
    ENSPHYP00025000997.1, ENSPHYT00025001487.1
    Conserved Domains (2) summary
    pfam00233
    Location:207 → 428
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:68 → 122
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  2. XM_034302120.2 → XP_034158011.2  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B isoform X1

    Related
    ENSPHYP00025000998.1, ENSPHYT00025001488.1
Nucleotide Protein
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